Chiral Lyotropic Liquid Crystals: TGB Phases and Helicoidal Structures

The molecules in lyotropic membranes are typically aligned with the surface normal. When these molecules are chiral, there is a tendency for the molecular direction to twist. These competing effects can reach a compromise by producing helicoidal defects in the membranes. Unlike thermotropic smectics, the centers of these defects are hollow and thus their energy cost comes from the line energy of an exposed lamellar surface. We describe both the twist-grain-boundary phase of chiral lamellar phases as well as the isolated helicoidal defects.Comment: 10 pages, plain TeX, two included figures, revision corrects figures onl

Twisted Line Liquids

We propose a model of directed lines where the average direction has the nature of a cholesteric liquid crystal. This model, for instance, would describe the liquid of screw dislocations in the twist-grain-boundary (TGB) phase of liquid crystals. We show that the presence of lines does not alter the long wavelength elasticity of a cholesteric and, therefore, does not stabilize Landau-Peierls instability of the cholesteric phase. We discuss other possible mechanisms for stabilizing the twist-grain-boundary phase.Comment: 10 pages, tex file (macros included), IASSNS-HEP-93/2

Phase Transitions in Lyotropic Nematic Gels

In this paper, we discuss the equilibrium phases and collapse transitions of a lyotropic nematic gel immersed in an isotropic solvent. A nematic gel consists of a cross-linked polymer network with rod-like molecules embedded in it. Upon decreasing the quality of the solvent, we find that a lyotropic nematic gel undergoes a discontinuous volume change accompanied by an isotropic-nematic transition. We also present phase diagrams that these systems may exhibit. In particular, we show that coexistence of two isotropic phases, of two nematic phases, or of an isotropic and a nematic phase can occur.Comment: 13 pages Revtex, 10 figures, submitted to EPJ

Connecting the vulcanization transition to percolation

The vulcanization transition is addressed via a minimal replica-field-theoretic model. The appropriate long-wave-length behavior of the two- and three-point vertex functions is considered diagrammatically, to all orders in perturbation theory, and identified with the corresponding quantities in the Houghton-Reeve-Wallace field-theoretic approach to the percolation critical phenomenon. Hence, it is shown that percolation theory correctly captures the critical phenomenology of the vulcanization transition associated with the liquid and critical states.Comment: 9 pages, 5 figure

Coupled dynamics of RNA folding and nanopore translocation

The translocation of structured RNA or DNA molecules through narrow pores necessitates the opening of all base pairs. Here, we study the interplay between the dynamics of translocation and base-pairing theoretically, using kinetic Monte Carlo simulations and analytical methods. We find that the transient formation of basepairs that do not occur in the ground state can significantly speed up translocation.Comment: 4 pages, 3 figures, to appear in Physical Review Letter

Effect of Salt Concentration on the Electrophoretic Speed of a Polyelectrolyte through a Nanopore

In a previous paper [S. Ghosal, Phys. Rev. E 74, 041901 (2006)] a hydrodynamic model for determining the electrophoretic speed of a polyelectrolyte through an axially symmetric slowly varying nanopore was presented in the limit of a vanishingly small Debye length. Here the case of a finite Debye layer thickness is considered while restricting the pore geometry to that of a cylinder of length much larger than the diameter. Further, the possibility of a uniform surface charge on the walls of the nanopore is taken into account. It is thereby shown that the calculated transit times are consistent with recent measurements in silicon nanopores.Comment: 4 pages, 2 figure

Elasticity Theory of a Twisted Stack of Plates

We present an elastic model of B-form DNA as a stack of thin, rigid plates or base pairs that are not permitted to deform. The symmetry of DNA and the constraint of plate rigidity limit the number of bulk elastic constants contributing to a macroscopic elasticity theory of DNA to four. We derive an effective twist-stretch energy in terms of the macroscopic stretch epsilon along and relative excess twist sigma about the DNA molecular axis. In addition to the bulk stretch and twist moduli found previously, we obtain a twist-stretch modulus with the following remarkable properties: 1) it vanishes when the radius of the helical curve following the geometric center of each plate is zero, 2) it vanishes with the elastic constant K_{23} that couples compression normal to the plates to a shear strain, if the plates are perpendicular to the molecular axis, and 3) it is nonzero if the plates are tilted relative to the molecular axis. This implies that a laminated helical structure carved out of an isotropic elastic medium will not twist in response to a stretching force, but an isotropic material will twist if it is bent into the shape of a helix.Comment: 19 pages, plain LaTeX, 1 included eps figur

Chirality in Liquid Crystals: from Microscopic Origins to Macroscopic Structure

Molecular chirality leads to a wonderful variety of equilibrium structures, from the simple cholesteric phase to the twist-grain-boundary phases, and it is responsible for interesting and technologically important materials like ferroelectric liquid crystals. This paper will review some recent advances in our understanding of the connection between the chiral geometry of individual molecules and the important phenomenological parameters that determine macroscopic chiral structure. It will then consider chiral structure in columnar systems and propose a new equilibrium phase consisting of a regular lattice of twisted ropes.Comment: 20 pages with 6 epsf figure